miRBase entry: cpi-mir-143

Stem-loop cpi-mir-143

Accession

MI0029486

Description

Chrysemys picta cpi-mir-143 precursor miRNA

Sequence

agcuccgucaaugucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaguugugagucUGAGAUGAAGCACUGUAGCUCgggaagggaggaacugugca
......((((...((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..))))))...)).)).

Structure

agcucc  -  aug      ag   a  G         G      U  -   g 
      gu ca   ucuccc  ccc aG UGCAGUGCU CAUCUC GG uca u
      || ||   ||||||  ||| || ||||||||| |||||| || |||  
      cg gu   ggaggg  ggg UC AUGUCACGA GUAGAG cu agu u
-----a  u  caa      aa   C  G         A      U  g   g

Annotation confidence Not enough data

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Genome context

KK088198.1: 3605724-3605824 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-143

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-143-5p

Accession	MIMAT0037768
Description	Chrysemys picta cpi-miR-143-5p mature miRNA
Sequence	27 - GGUGCAGUGCUGCAUCUCUGG - 47
Evidence	experimental Illumina [1]

Mature cpi-miR-143-3p

Accession	MIMAT0037769
Description	Chrysemys picta cpi-miR-143-3p mature miRNA
Sequence	61 - UGAGAUGAAGCACUGUAGCUC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196