miRBase entry: cpi-mir-145

Stem-loop cpi-mir-145

Accession

MI0029488

Description

Chrysemys picta cpi-mir-145 precursor miRNA

Sequence

guguccucaggGUCCAGUUUUCCCAGGAAUCCCUuaggcacuaugacggGGAUUCCUGGAAAUACUGUUCUugaggccauggcucagcagcu
(((.((((((((..((((.((.(((((((((((((((...)))....)))))))))))).)).)))).)))))))).)))((((....))))

Structure

------------   u        UC    U  C            ----   g 
            gug ccucaggG  CAGU UU CCAGGAAUCCCU    uag  
            ||| ||||||||  |||| || ||||||||||||    ||| c
            uac ggaguUCU  GUCA AA GGUCCUUAGGgg    auc  
ucgacgacucgg   c        -U    U  A            cagu   a

Annotation confidence Not enough data

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Genome context

KK088198.1: 3606854-3606945 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-145

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-145-5p

Accession	MIMAT0037772
Description	Chrysemys picta cpi-miR-145-5p mature miRNA
Sequence	12 - GUCCAGUUUUCCCAGGAAUCCCU - 34
Evidence	experimental Illumina [1]

Mature cpi-miR-145-3p

Accession	MIMAT0037773
Description	Chrysemys picta cpi-miR-145-3p mature miRNA
Sequence	50 - GGAUUCCUGGAAAUACUGUUCU - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196