Stem-loop cpi-mir-146a

Accession

MI0029489

Description

Chrysemys picta cpi-mir-146a precursor miRNA

Sequence

guauucucagcuuUGAGAACUGAAUUCCAUGUGUUGuaauugaaucucugucagACCCAUGGGGCUCAGUUCUUCAgcuuggauaucu
((((((..((((..(((((((((.(((((((.(((......((...)).....))).))))))).))))))))).)))).))))))..

Structure

--      uc    uU         A       U   Guaauu  a 
  guauuc  agcu  GAGAACUGA UUCCAUG GUU      ga  
  ||||||  ||||  ||||||||| ||||||| |||      || u
  uauagg  ucgA  UUCUUGACU GGGGUAC CAg      cu  
uc      -u    -C         C       C   -acugu  c 

Annotation confidence Not enough data

Genome context

KK088198.1: 5094007-5094094 [+]

Mature cpi-miR-146a-5p

• Accession: MIMAT0037774
• Description: Chrysemys picta cpi-miR-146a-5p mature miRNA
• Sequence: 14 - UGAGAACUGAAUUCCAUGUGUUG - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-146a-3p

• Accession: MIMAT0037775
• Description: Chrysemys picta cpi-miR-146a-3p mature miRNA
• Sequence: 55 - ACCCAUGGGGCUCAGUUCUUCA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196