Stem-loop cpi-mir-146b

Accession

MI0029490

Description

Chrysemys picta cpi-mir-146b precursor miRNA

Sequence

agcugcuuggcuuUGAGAACUGAAUUCCAUAGGCUUUaaaauaaugaaaaCGCCCUGUGGCUUCAGUUCUGUAgcuggguagcaa
.(((((((((((...(((((((((..((((((((((((......))))...).))))))).)))))))))..)))))))))))..

Structure

-a           uUG         UU       - ---    aa 
  gcugcuuggcu   AGAACUGAA  CCAUAGG C   UUUa  a
  |||||||||||   |||||||||  ||||||| |   ||||   
  cgaugggucgA   UCUUGACUU  GGUGUCC G   aagu  u
aa           -UG         -C       C Caa    aa 

Annotation confidence Not enough data

Genome context

KK088201.1: 3368937-3369021 [-]

Mature cpi-miR-146b-5p

• Accession: MIMAT0037776
• Description: Chrysemys picta cpi-miR-146b-5p mature miRNA
• Sequence: 14 - UGAGAACUGAAUUCCAUAGGCUUU - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-146b-3p

• Accession: MIMAT0037777
• Description: Chrysemys picta cpi-miR-146b-3p mature miRNA
• Sequence: 51 - CGCCCUGUGGCUUCAGUUCUGUA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196