miRBase entry: cpi-mir-181a-1

Stem-loop cpi-mir-181a-1

Accession

MI0029500

Description

Chrysemys picta cpi-mir-181a-1 precursor miRNA

Sequence

guugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuaaagugaaaACCAUCGACCGUUGAUUGUACccuccagcuaaccauca
((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).))).....

Structure

-----   -   uc  u A   U      CU       A    ggaau 
     guu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
     ||| |||  || | ||| ||||||  ||||||| ||||     a
     caa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
acuac   u   cc  c A   U      --       -    aguga

Annotation confidence Not enough data

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Genome context

KK088227.1: 2809170-2809259 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-181a-5p

Accession	MIMAT0037791
Description	Chrysemys picta cpi-miR-181a-5p mature miRNA
Sequence	13 - AACAUUCAACGCUGUCGGUGAGU - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-181a-3p

Accession	MIMAT0037792
Description	Chrysemys picta cpi-miR-181a-3p mature miRNA
Sequence	53 - ACCAUCGACCGUUGAUUGUAC - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196