miRBase entry: cpi-mir-181a-2

Stem-loop cpi-mir-181a-2

Accession

MI0029501

Description

Chrysemys picta cpi-mir-181a-2 precursor miRNA

Sequence

gauagcuucagugAACAUUCAACGCUGUCGGUGAGUuugagaauuagaaaaaACCAUCGACCGUUGACUGUACCuugagguauaucaca
(((((((((((.(.(((.((((((..(((((((.((((............))))))))))))))))).))).).))))))).))))...

Structure

---    -       u A   U      CU       A    gagaa 
   gaua gcuucag g ACA UCAACG  GUCGGUG GUuu     u
   |||| ||||||| | ||| ||||||  ||||||| ||||      
   cuau uggaguu C UGU AGUUGC  CAGCUAC CAaa     u
aca    a       C A   C      --       -    aaaga

Annotation confidence Not enough data

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Genome context

KK083017.1: 722310-722398 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-181a-5p

Accession	MIMAT0037791
Description	Chrysemys picta cpi-miR-181a-5p mature miRNA
Sequence	14 - AACAUUCAACGCUGUCGGUGAGU - 36
Evidence	experimental Illumina [1]

Mature cpi-miR-181a-2-3p

Accession	MIMAT0037793
Description	Chrysemys picta cpi-miR-181a-2-3p mature miRNA
Sequence	53 - ACCAUCGACCGUUGACUGUACC - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196