miRBase entry: cpi-mir-181a-3

Stem-loop cpi-mir-181a-3

Accession

MI0029502

Description

Chrysemys picta cpi-mir-181a-3 precursor miRNA

Sequence

caaagguuucagugAACAUUCAACGCUGUCGGUGAGUuuucucaauaagguuaaACCAUCGACCGUUGAGUGUACCcugcggccggauu
....((((.(((.(.((((((((((..(((((((.((((..((.....))..))))))))))))))))))))).).))).)))).....

Structure

-caaa    u   u A          CU       A    uc  a 
     gguu cag g ACAUUCAACG  GUCGGUG GUuu  uc a
     |||| ||| | ||||||||||  ||||||| ||||  || u
     ccgg guc C UGUGAGUUGC  CAGCUAC CAaa  gg a
uuagg    c   C A          --       -    uu  a

Annotation confidence Not enough data

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Genome context

KK088216.1: 223346-223434 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-181a-5p

Accession	MIMAT0037791
Description	Chrysemys picta cpi-miR-181a-5p mature miRNA
Sequence	15 - AACAUUCAACGCUGUCGGUGAGU - 37
Evidence	experimental Illumina [1]

Mature cpi-miR-181a-3-3p

Accession	MIMAT0037794
Description	Chrysemys picta cpi-miR-181a-3-3p mature miRNA
Sequence	55 - ACCAUCGACCGUUGAGUGUACC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196