miRBase entry: cpi-mir-181b-1

Stem-loop cpi-mir-181b-1

Accession

MI0029503

Description

Chrysemys picta cpi-mir-181b-1 precursor miRNA

Sequence

aggucacaaucAACAUUCAUUGCUGUCGGUGGGUUuaacuauguggacaaGCUCACUGAACAAUGAAUGCAacuguggccccac
.(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))....

Structure

---a       aucAA         CUG           aa  a 
    ggucaca     CAUUCAUUG   UCGGUGGGUUu  cu u
    |||||||     |||||||||   |||||||||||  ||  
    ccggugu     GUAAGUAAC   AGUCACUCGaa  gg g
cacc       -caAC         --A           ca  u

Annotation confidence Not enough data

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Genome context

KK088227.1: 2808979-2809062 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-181b-5p

Accession	MIMAT0037795
Description	Chrysemys picta cpi-miR-181b-5p mature miRNA
Sequence	12 - AACAUUCAUUGCUGUCGGUGGGUU - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-181b-1-3p

Accession	MIMAT0037796
Description	Chrysemys picta cpi-miR-181b-1-3p mature miRNA
Sequence	51 - GCUCACUGAACAAUGAAUGCA - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196