miRBase entry: cpi-mir-181b-2

Stem-loop cpi-mir-181b-2

Accession

MI0029504

Description

Chrysemys picta cpi-mir-181b-2 precursor miRNA

Sequence

gcaucuaauggcugcaaucAACAUUCAUUGCUGUCGGUGGGUUuuaguuuguaucaaCUCACUGAUCAAUGAAUGCAaacugcggaccagguagcua
((((((...(((((((.....(((((((((..(((((((((((.((.....))..)))))))))))))))))))).....))))).)))))).))..

Structure

--  -    aau  -     aucAA         CU           -u  g 
  gc aucu   gg cugca     CAUUCAUUG  GUCGGUGGGUU  ua u
  || ||||   || |||||     |||||||||  |||||||||||  || u
  cg ugga   cc ggcgu     GUAAGUAAC  UAGUCACUCaa  au u
au  a    ---  a     caaAC         --           cu  g

Annotation confidence Not enough data

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Genome context

KK083017.1: 724788-724884 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-181b-5p

Accession	MIMAT0037795
Description	Chrysemys picta cpi-miR-181b-5p mature miRNA
Sequence	20 - AACAUUCAUUGCUGUCGGUGGGUU - 43
Evidence	experimental Illumina [1]

Mature cpi-miR-181b-3p

Accession	MIMAT0037797
Description	Chrysemys picta cpi-miR-181b-3p mature miRNA
Sequence	58 - CUCACUGAUCAAUGAAUGCA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196