miRBase entry: cpi-mir-183

Stem-loop cpi-mir-183

Accession

MI0029507

Description

Chrysemys picta cpi-mir-183 precursor miRNA

Sequence

gcguuacuccuguucugugUAUGGCACUGGUAGAAUUCACugugaaaacacacuaucagugaauuaccauagggccauaaacagagcagagaaagaacc
..(((..(((((((((((.((((((..(((((..((((((((..(........)..)))))))))))))....)))))).))))))))).))...))).

Structure

gc   -ac  -         g      --AC     GA        ug aaa 
  guu   uc cuguucugu UAUGGC    UGGUA  AUUCACug  a   c
  |||   || ||||||||| ||||||    |||||  ||||||||  |    
  caa   ag gacgagaca auaccg    accau  uaagugac  u   a
-c   gaa  a         a      ggau     --        ua cac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK083104.1: 1276366-1276464 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-183

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-183-5p

Accession	MIMAT0037800
Description	Chrysemys picta cpi-miR-183-5p mature miRNA
Sequence	20 - UAUGGCACUGGUAGAAUUCAC - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196