Stem-loop cpi-mir-193a

Accession

MI0029514

Description

Chrysemys picta cpi-mir-193a precursor miRNA

Sequence

gggcgagucuagggcUGGGUCUUUGCGGGCGAGAUGagagguuuguggauucAACUGGCCUACAAAGUCCCAGuucucggcucc
....(((((.(((((((((.(((((.((((.((.((((...........)))).)).)))).))))).))))))))).))))).

Structure

gggc     u         U     C    G  A    aggu 
    gaguc agggcUGGG CUUUG GGGC AG UGag    u
    ||||| ||||||||| ||||| |||| || ||||    u
    cucgg ucuuGACCC GAAAC UCCG UC Acuu    g
---c     c         U     A    G  A    aggu 

Annotation confidence Not enough data

Genome context

KK082918.1: 1636933-1637016 [+]

Mature cpi-miR-193a-5p

• Accession: MIMAT0037809
• Description: Chrysemys picta cpi-miR-193a-5p mature miRNA
• Sequence: 16 - UGGGUCUUUGCGGGCGAGAUG - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-193a-3p

• Accession: MIMAT0037810
• Description: Chrysemys picta cpi-miR-193a-3p mature miRNA
• Sequence: 53 - AACUGGCCUACAAAGUCCCAG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196