miRBase entry: cpi-mir-194-1

Stem-loop cpi-mir-194-1

Accession

MI0029516

Description

Chrysemys picta cpi-mir-194-1 precursor miRNA

Sequence

caguguuaucagaUGUAACAGCAACUCCAUGUGGAcuacacugacuuCCAGUGGAGAUGCUGUUACUUuugauaucuacugac
(((((.(((((((.(((((((((.((((((.((((...........)))))))))).))))))))).)))))))..)))))..

Structure

--     -u       U         A      G    cuac 
  cagug  uaucaga GUAACAGCA CUCCAU UGGA    a
  |||||  ||||||| ||||||||| |||||| ||||    c
  gucau  auaguuU CAUUGUCGU GAGGUG ACCu    u
ca     cu       U         A      -    ucag

Annotation confidence Not enough data

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Genome context

KK088190.1: 1310613-1310695 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-194-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-194-5p

Accession	MIMAT0037812
Description	Chrysemys picta cpi-miR-194-5p mature miRNA
Sequence	14 - UGUAACAGCAACUCCAUGUGGA - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-194-3p

Accession	MIMAT0037813
Description	Chrysemys picta cpi-miR-194-3p mature miRNA
Sequence	48 - CCAGUGGAGAUGCUGUUACUU - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196