miRBase entry: cpi-mir-194-2

Stem-loop cpi-mir-194-2

Accession

MI0029517

Description

Chrysemys picta cpi-mir-194-2 precursor miRNA

Sequence

gugaugccuauuggaUGUAACAGCAACUCCAUGUGGAagguuucaucccuuuuCCAGUGGGGCUGCUGUUAUUUuugauaggcugucag
.((((((((((((((.(((((((((.((((((.(((((((......))...))))))))))).))))))))).)))))))))).)))).

Structure

g    -          U         A      G     ---  uu 
 ugau gccuauugga GUAACAGCA CUCCAU UGGAa   gg  u
 |||| |||||||||| ||||||||| |||||| |||||   ||   
 acug cggauaguuU UAUUGUCGU GGGGUG ACCuu   cc  c
g    u          U         C      -     uuc  ua

Annotation confidence Not enough data

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Genome context

KK088199.1: 6795569-6795657 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-194-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-194-5p

Accession	MIMAT0037812
Description	Chrysemys picta cpi-miR-194-5p mature miRNA
Sequence	16 - UGUAACAGCAACUCCAUGUGGA - 37
Evidence	experimental Illumina [1]

Mature cpi-miR-194-2-3p

Accession	MIMAT0037814
Description	Chrysemys picta cpi-miR-194-2-3p mature miRNA
Sequence	54 - CCAGUGGGGCUGCUGUUAUUU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196