Stem-loop cpi-mir-196-1

Accession

MI0029518

Description

Chrysemys picta cpi-mir-196-1 precursor miRNA

Sequence

gaacuagaacugcuuugugaauUAGGUAGUUUCAUGUUGUUGGGguuuuauuuuuaaacaCAAGAACAUAAAACUACCUGAuuuacuccaguuauucuc
.......(((((....((((((((((((((((.(((((.(((..((((.......)))).))).))))).))))))))))))))))..)))))......

Structure

gaacuag     cuuu                C     G   GG    ua 
       aacug    gugaauUAGGUAGUUU AUGUU UUG  guuu  u
       |||||    |||||||||||||||| ||||| |||  ||||  u
       uugac    cauuuAGUCCAUCAAA UACAA AAC  caaa  u
-cucuua     --cu                A     G   -a    uu 

Annotation confidence Not enough data

Genome context

KK088207.1: 2530619-2530717 [+]

Mature cpi-miR-196-5p

• Accession: MIMAT0037815
• Description: Chrysemys picta cpi-miR-196-5p mature miRNA
• Sequence: 23 - UAGGUAGUUUCAUGUUGUUGGG - 44
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-196-3p

• Accession: MIMAT0037816
• Description: Chrysemys picta cpi-miR-196-3p mature miRNA
• Sequence: 61 - CAAGAACAUAAAACUACCUGA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196