Stem-loop cpi-mir-196-3

Accession

MI0029520

Description

Chrysemys picta cpi-mir-196-3 precursor miRNA

Sequence

cugagaacuguucuguaguuUAGGUAGUUUCAUGUUGUUGGGgcuccaccuuucucucugcagcacgaaacugccuuaauuacuucaguugaaaucauc
.....(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........

Structure

----cugag     uucu      U          A      U    cucc 
         aacug    guaguu AGGUAGUUUC UGUUGU GGGg    a
         |||||    |||||| |||||||||| |||||| ||||    c
         uugac    cauuaa uccgucaaag acgacg cucu    c
cuacuaaag     --uu      u          c      u    cuuu 

Annotation confidence Not enough data

Genome context

chr2: 12274641-12274739 [-]

Mature cpi-miR-196-5p

• Accession: MIMAT0037815
• Description: Chrysemys picta cpi-miR-196-5p mature miRNA
• Sequence: 21 - UAGGUAGUUUCAUGUUGUUGGG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196