miRBase entry: cpi-mir-199-2

Stem-loop cpi-mir-199-2

Accession

MI0029522

Description

Chrysemys picta cpi-mir-199-2 precursor miRNA

Sequence

gauccugcuccgucgcCCCAGUGUUCAGACUACCUGuucaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUAgacugggcaagggaaa
...(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).)))....

Structure

-gau   -    c   gcC       U        C   ucag    a 
    ccu gcuc guc   CCAGUGU CAGACUAC UGu    gaca u
    ||| |||| |||   ||||||| |||||||| |||    ||||  
    gga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
aaag   a    u   AUU       C        -   --ug    c

Annotation confidence Not enough data

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Genome context

KK083408.1: 211169-211261 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-199-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-199-5p

Accession	MIMAT0037818
Description	Chrysemys picta cpi-miR-199-5p mature miRNA
Sequence	17 - CCCAGUGUUCAGACUACCUG - 36
Evidence	experimental Illumina [1]

Mature cpi-miR-199-3p

Accession	MIMAT0037819
Description	Chrysemys picta cpi-miR-199-3p mature miRNA
Sequence	56 - ACAGUAGUCUGCACAUUGGUUA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196