miRBase entry: cpi-mir-200a

Stem-loop cpi-mir-200a

Accession

MI0029524

Description

Chrysemys picta cpi-mir-200a precursor miRNA

Sequence

uaugguccucuguggaCAUCUUACUAGACAGUGCUGGAuuuuuuggaucuacucUAACACUGUCUGGUAACGAUGUUuaaagggugaaccaa
..(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).)))).

Structure

ua    - -    g        -             C    uuuuuu 
  uggu c cucu uggaCAUC UUACUAGACAGUG UGGA      g
  |||| | |||| |||||||| ||||||||||||| ||||       
  acca g ggga auUUGUAG AAUGGUCUGUCAC AUcu      g
-a    a u    a        C             A    caucua

Annotation confidence Not enough data

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Genome context

chr24: 8886861-8886952 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-200a-5p

Accession	MIMAT0037820
Description	Chrysemys picta cpi-miR-200a-5p mature miRNA
Sequence	17 - CAUCUUACUAGACAGUGCUGGA - 38
Evidence	experimental Illumina [1]

Mature cpi-miR-200a-3p

Accession	MIMAT0037821
Description	Chrysemys picta cpi-miR-200a-3p mature miRNA
Sequence	55 - UAACACUGUCUGGUAACGAUGUU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196