miRBase entry: cpi-mir-206

Stem-loop cpi-mir-206

Accession

MI0029533

Description

Chrysemys picta cpi-mir-206 precursor miRNA

Sequence

uucucuuuugagacaACAUGCUUCUUUAUAUCCCCAUaugaauuaugcugcuaUGGAAUGUAAGGAAGUGUGUGGuuucagggagauga
.(((((((.(((((.((((((((((((((((..(((((.............))))).)))))))))))))))).))))))))))))...

Structure

--u       u     a                CC     ugaau 
   ucucuuu gagac ACAUGCUUCUUUAUAU  CCAUa     u
   ||||||| ||||| ||||||||||||||||  |||||     a
   agaggga cuuuG UGUGUGAAGGAAUGUA  GGUau     u
agu       -     G                -A     cgucg

Annotation confidence Not enough data

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Genome context

KK088210.1: 11554133-11554221 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-206

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-206-5p

Accession	MIMAT0037833
Description	Chrysemys picta cpi-miR-206-5p mature miRNA
Sequence	16 - ACAUGCUUCUUUAUAUCCCCAU - 37
Evidence	experimental Illumina [1]

Mature cpi-miR-206-3p

Accession	MIMAT0037834
Description	Chrysemys picta cpi-miR-206-3p mature miRNA
Sequence	54 - UGGAAUGUAAGGAAGUGUGUGG - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196