Stem-loop cpi-mir-208

Accession

MI0029534

Description

Chrysemys picta cpi-mir-208 precursor miRNA

Sequence

uuccucuaacagggAAGCUUUUGGCUCGGGUUAUAUuuucacucgcggcguauaagacgagcaaaaagcuuguugguuggaggaga
((((((((((.((.((((((((.(((((..((((((..((......)).))))))..))))).)))))))).)).)))))))))).

Structure

-          a  g        G     GG      uu  ac 
 uuccucuaac gg AAGCUUUU GCUCG  UUAUAU  uc  u
 |||||||||| || |||||||| |||||  ||||||  ||   
 gaggagguug uu uucgaaaa cgagc  aauaug  gg  c
a          g  g        a     ag      -c  cg 

Annotation confidence Not enough data

Genome context

KK083131.1: 1021794-1021879 [+]

Mature cpi-miR-208-5p

• Accession: MIMAT0037835
• Description: Chrysemys picta cpi-miR-208-5p mature miRNA
• Sequence: 15 - AAGCUUUUGGCUCGGGUUAUAU - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196