miRBase entry: cpi-mir-212

Stem-loop cpi-mir-212

Accession

MI0029536

Description

Chrysemys picta cpi-mir-212 precursor miRNA

Sequence

gucagcgcgucggcACCUUGGCUCUAGACUGAUUAcugcuaaguagcauuaaagaaacaguaacagucuacagucauggcuacugaagcauga
.(((..((.((((..((.(((((.(((((((.((((((...................))))))))))))).))))).))...)))).)).)))

Structure

g   gc  g    -cA  U     C       A      cuaaguag 
 uca  gc ucgg   CC UGGCU UAGACUG UUAcug        c
 |||  || ||||   || ||||| ||||||| ||||||        a
 agu  cg aguc   gg acuga aucugac aaugac        u
-   -a  a    auc  u     c       -      aaagaaau

Annotation confidence Not enough data

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Genome context

KK083788.1: 25119-25211 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-212

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-212-5p

Accession	MIMAT0037838
Description	Chrysemys picta cpi-miR-212-5p mature miRNA
Sequence	15 - ACCUUGGCUCUAGACUGAUUA - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196