miRBase entry: cpi-mir-214

Stem-loop cpi-mir-214

Accession

MI0029537

Description

Chrysemys picta cpi-mir-214 precursor miRNA

Sequence

ggacggaguugucaugugucuGCCUGUCUACACUUGCUGUGCagaacauccucucaccugUACAGCAGGCACAGACAGGCAGucacaugacaacccagcc
((..((.(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).)))))))))))))..))

Structure

  ac  a           u          ACA            aacau 
gg  gg guugucaugug cuGCCUGUCU   CUUGCUGUGCag     c
||  || ||||||||||| ||||||||||   ||||||||||||     c
cc  cc caacaguacac GACGGACAGA   GGACGACAUguc     u
  ga  -           u          CAC            cacuc

Annotation confidence Not enough data

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Genome context

KK083408.1: 204476-204575 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-214

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-214-5p

Accession	MIMAT0037839
Description	Chrysemys picta cpi-miR-214-5p mature miRNA
Sequence	22 - GCCUGUCUACACUUGCUGUGC - 42
Evidence	experimental Illumina [1]

Mature cpi-miR-214-3p

Accession	MIMAT0037840
Description	Chrysemys picta cpi-miR-214-3p mature miRNA
Sequence	61 - UACAGCAGGCACAGACAGGCAG - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196