miRBase entry: cpi-mir-215

Stem-loop cpi-mir-215

Accession

MI0029538

Description

Chrysemys picta cpi-mir-215 precursor miRNA

Sequence

guguacaggaaaAUGACCUAUGAAUUGACAGACugugucuucuaaauuuguCUGUCACUUCUGUAGGCCAAUAuucugcaugccuua
((((.(((((...((.((((((((.((((((((................)))))))).))).))))).))...))))).))))....

Structure

----    a     aaA  A     -   U        ugugucu 
    gugu cagga   UG CCUAU GAA UGACAGAC       u
    |||| |||||   || ||||| ||| ||||||||        
    cgua gucuu   AC GGAUG CUU ACUGUCug       c
auuc    c     AUA  C     U   C        uuuaaau

Annotation confidence Not enough data

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Genome context

KK088190.1: 1310931-1311017 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-215

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-215-5p

Accession	MIMAT0037841
Description	Chrysemys picta cpi-miR-215-5p mature miRNA
Sequence	13 - AUGACCUAUGAAUUGACAGAC - 33
Evidence	experimental Illumina [1]

Mature cpi-miR-215-3p

Accession	MIMAT0037842
Description	Chrysemys picta cpi-miR-215-3p mature miRNA
Sequence	52 - CUGUCACUUCUGUAGGCCAAUA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196