Stem-loop cpi-mir-216a

Accession

MI0029539

Description

Chrysemys picta cpi-mir-216a precursor miRNA

Sequence

ggauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGAgcaauuaauacauucucucacagugguaucugggauuaugcuaaacacagcaauuuc
.....((((((..(((((.(((((((((.((.((.(((((((.(((......)))..))))))))).)).))))))))).))))).))))))......

Structure

-ggaug      aa     u         C  G  A       -c   ua 
      gcugug  uuggc UAAUCUCAG UG CA CUGUGAg  aau  a
      ||||||  ||||| ||||||||| || || |||||||  |||   
      cgacac  aaucg auuaggguc au gu gacacuc  uua  u
cuuuaa      -a     u         u  g  -       uc   ca 

Annotation confidence Not enough data

Genome context

AHGY02151174.1: 349-446 [-]

Mature cpi-miR-216a-5p

• Accession: MIMAT0037843
• Description: Chrysemys picta cpi-miR-216a-5p mature miRNA
• Sequence: 20 - UAAUCUCAGCUGGCAACUGUGA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196