Stem-loop cpi-mir-219-2

Accession

MI0029545

Description

Chrysemys picta cpi-mir-219-2 precursor miRNA

Sequence

caggaaucucugcuccUGAUUGUCCAAACGCAAUUCUUGugcaauggaaucauacaaaccaAGAAUUGUGUCUGGACAUCUGuggcagagauuuca
..((((((((((((.(.(((.(((((.((((((((((((.(...((........))..))))))))))))).)))))))).).)))))))))))).

Structure

ca            c U   U     A            u caa  gaa 
  ggaaucucugcu c GAU GUCCA ACGCAAUUCUUG g   ug   u
  |||||||||||| | ||| ||||| |||||||||||| |   ||    
  cuuuagagacgg G CUA CAGGU UGUGUUAAGAac c   ac   c
-a            u U   -     C            - -aa  aua 

Annotation confidence Not enough data

Genome context

KK082938.1: 6682723-6682818 [-]

Mature cpi-miR-219-5p

• Accession: MIMAT0037848
• Description: Chrysemys picta cpi-miR-219-5p mature miRNA
• Sequence: 17 - UGAUUGUCCAAACGCAAUUCUUG - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-219-3p

• Accession: MIMAT0037849
• Description: Chrysemys picta cpi-miR-219-3p mature miRNA
• Sequence: 62 - AGAAUUGUGUCUGGACAUCUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196