miRBase entry: cpi-mir-222a

Stem-loop cpi-mir-222a

Accession

MI0029547

Description

Chrysemys picta cpi-mir-222a precursor miRNA

Sequence

uguaguugccuaucaguCGCUCAGUAGUCAGUGUAGAUUCugucuuuacaaucagcAGCUACAUCUGGCUACUGGGUCUcugaugacaucuu
..........((((((..((((((((((((((((((...(((..........)))...))))).)))))))))))))..)))))).......

Structure

uguaguugcc      uC             -     AUU   ucuu 
          uaucag  GCUCAGUAGUCAG UGUAG   Cug    u
          ||||||  ||||||||||||| |||||   |||     
          guaguc  UGGGUCAUCGGUC ACAUC   gac    a
---uucuaca      UC             U     GAc   uaac

Annotation confidence Not enough data

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Genome context

KK082977.1: 2888524-2888615 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-222a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-222a-5p

Accession	MIMAT0037852
Description	Chrysemys picta cpi-miR-222a-5p mature miRNA
Sequence	18 - CGCUCAGUAGUCAGUGUAGAUUC - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-222a-3p

Accession	MIMAT0037853
Description	Chrysemys picta cpi-miR-222a-3p mature miRNA
Sequence	57 - AGCUACAUCUGGCUACUGGGUCU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196