Stem-loop cpi-mir-223

Accession

MI0029549

Description

Chrysemys picta cpi-mir-223 precursor miRNA

Sequence

ugcagugcugcgcucCGUGUAUUUGACAAGCUGAGUUUgacacucaauguggcagagUGUCAGUUUGUCAAAUACCCCAagugaagcauuugcuua
.((((((((.((((..(.((((((((((((((((.((((.(((.....))).))))...)))))))))))))))).)..)))).)))).))))...

Structure

--u    -    g    cC U                --G    a   u 
   gcag ugcu cgcu  G GUAUUUGACAAGCUGA   UUUg cac c
   |||| |||| ||||  | ||||||||||||||||   |||| ||| a
   cguu acga guga  C CAUAAACUGUUUGACU   agac gug a
auu    u    a    AC C                GUg    g   u 

Annotation confidence Not enough data

Genome context

KK083044.1: 1602018-1602113 [+]

Mature cpi-miR-223-5p

• Accession: MIMAT0037856
• Description: Chrysemys picta cpi-miR-223-5p mature miRNA
• Sequence: 16 - CGUGUAUUUGACAAGCUGAGUUU - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-223-3p

• Accession: MIMAT0037857
• Description: Chrysemys picta cpi-miR-223-3p mature miRNA
• Sequence: 58 - UGUCAGUUUGUCAAAUACCCCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196