miRBase entry: cpi-mir-301a

Stem-loop cpi-mir-301a

Accession

MI0029550

Description

Chrysemys picta cpi-mir-301a precursor miRNA

Sequence

ugcugcuaacgaaugcucugacuuuauugcacuacuguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCaucugaaagcagag
..(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))..

Structure

ug     aa  a     c    ---u          a  -  acu 
  cugcu  cg augcu ugac    uuauugcacu cu gu   u
  |||||  || ||||| ||||    |||||||||| || ||    
  gacga  gu uaCGA ACUG    GAUAACGUGA ga cg   u
ga     aa  c     A    UUAU          C  u  aca

Annotation confidence Not enough data

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Genome context

KK088184.1: 245711-245798 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-301a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-301a-3p

Accession	MIMAT0037858
Description	Chrysemys picta cpi-miR-301a-3p mature miRNA
Sequence	52 - CAGUGCAAUAGUAUUGUCAAAGC - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196