miRBase entry: cpi-mir-301b

Stem-loop cpi-mir-301b

Accession

MI0029551

Description

Chrysemys picta cpi-mir-301b precursor miRNA

Sequence

cugcugguaucgcuggcucugacaauguugcacuacugucugcacaaauaaagCAGUGCAAUAAUAUUGUCAAAGCauuugguuccaguc
..(((((.((((...(((.(((((((((((((((.((..............)).))))))...))))))))).)))...)))).))))).

Structure

cu     u    cug   c         ---      a  gucugc 
  gcugg aucg   gcu ugacaaugu   ugcacu cu      a
  ||||| ||||   ||| |||||||||   |||||| ||       
  ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
-c     u    uua   A         AUA      C  aauaaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK082934.1: 2434331-2434420 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-301b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-301b-3p

Accession	MIMAT0037859
Description	Chrysemys picta cpi-miR-301b-3p mature miRNA
Sequence	54 - CAGUGCAAUAAUAUUGUCAAAGC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196