miRBase entry: cpi-mir-302a

Stem-loop cpi-mir-302a

Accession

MI0029552

Description

Chrysemys picta cpi-mir-302a precursor miRNA

Sequence

agcuuaaaggacccccacuacuuuaauguggaaguacuugcuuugcuccugauaaagUAAGUGCUUCCAUGUUUUAGUGauggugaaaccug
.......(((...((((.((((..((((((((((((((((((((((....).)))))))))))))))))))))..)))).))).)...))).

Structure

agcuuaa   acc -   c    uu                     - u 
       agg   c cca uacu  aauguggaaguacuugcuuug c c
       |||   | ||| ||||  ||||||||||||||||||||| |  
       ucc   g ggu GUGA  UUGUACCUUCGUGAAUgaaau g c
------g   aaa u   a    UU                     a u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK082956.1: 5875601-5875692 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cpi-mir-302a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-302a-3p

Accession	MIMAT0037860
Description	Chrysemys picta cpi-miR-302a-3p mature miRNA
Sequence	58 - UAAGUGCUUCCAUGUUUUAGUG - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196