miRBase entry: cpi-mir-302b

Stem-loop cpi-mir-302b

Accession

MI0029553

Description

Chrysemys picta cpi-mir-302b precursor miRNA

Sequence

ccccuucuacuuuaacauggaggugcuuucugugacuauaaaaagUAAGUGCUUCCAUGUUUUAGUAGaggugaauccugaucu
...((((((((..(((((((((((((((.((............)).)))))))))))))))..)))))))).............

Structure

----------ccc        uu               u  gugac 
             cuucuacu  aacauggaggugcuu cu     u
             ||||||||  ||||||||||||||| ||      
             ggaGAUGA  UUGUACCUUCGUGAA ga     a
ucuaguccuaagu        UU               U  aaaau

Annotation confidence Not enough data

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Genome context

KK082956.1: 5876249-5876332 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cpi-mir-302b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-302b-3p

Accession	MIMAT0037861
Description	Chrysemys picta cpi-miR-302b-3p mature miRNA
Sequence	46 - UAAGUGCUUCCAUGUUUUAGUAG - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196