miRBase entry: cpi-mir-302c

Stem-loop cpi-mir-302c

Accession

MI0029554

Description

Chrysemys picta cpi-mir-302c precursor miRNA

Sequence

uuaaaggacccccuuugcuuuaacauggggguaccugcugccuagaaaaagUAAGUGCUUCCAUGUUUCAGUcguggugg
........((.((...(((..(((((((((((((.((((..........)))).)))))))))))))..)))...)).))

Structure

uuaaagga  c  uuu   uu             c    gccu 
        cc cc   gcu  aacauggggguac ugcu    a
        || ||   |||  ||||||||||||| ||||     
        gg gg   UGA  UUGUACCUUCGUG AUga    g
--------  u  ugc   CU             A    aaaa

Annotation confidence Not enough data

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Genome context

KK082956.1: 5875986-5876065 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cpi-mir-302c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-302c-3p

Accession	MIMAT0037862
Description	Chrysemys picta cpi-miR-302c-3p mature miRNA
Sequence	52 - UAAGUGCUUCCAUGUUUCAGU - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196