miRBase entry: cpi-mir-302d

Stem-loop cpi-mir-302d

Accession

MI0029555

Description

Chrysemys picta cpi-mir-302d precursor miRNA

Sequence

ccccucuacuuuaacauggaaguacuugcuggaugcuugaaaaagUAAGUGCUUCCAUGUUUUAGUUguggugaauccu
..((.(.(((..((((((((((((((((((.............))))))))))))))))))..))).).))........

Structure

------cc  u u   uu                  ggaug 
        cc c acu  aacauggaaguacuugcu     c
        || | |||  ||||||||||||||||||     u
        gg g UGA  UUGUACCUUCGUGAAUga     u
uccuaagu  u U   UU                  aaaag

Annotation confidence Not enough data

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Genome context

KK082956.1: 5875126-5875204 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cpi-mir-302d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-302d-3p

Accession	MIMAT0037863
Description	Chrysemys picta cpi-miR-302d-3p mature miRNA
Sequence	46 - UAAGUGCUUCCAUGUUUUAGUU - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196