miRBase entry: cpi-mir-425

Stem-loop cpi-mir-425

Accession

MI0029564

Description

Chrysemys picta cpi-mir-425 precursor miRNA

Sequence

uggcgagaaauugcuuuggAAUGACACGAUCACUCCCGCUGAGcaagcagccagagCCAUCGGGAAUAUCGUGUCCGUccaaagcuuuuucggca
((.(((((((..((((((((..((((((((...(((((.((.((...........)))).)))))..))))))))..))))))))))))))).))

Structure

  g       uu        AU        CAC     C  A  aagc 
ug cgagaaa  gcuuuggA  GACACGAU   UCCCG UG Gc    a
|| |||||||  ||||||||  ||||||||   ||||| || ||    g
ac gcuuuuu  cgaaaccU  CUGUGCUA   AGGGC AC Cg    c
  g       --        GC        -UA     U  -  agac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK083069.1: 932525-932619 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-425

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-425-5p

Accession	MIMAT0037875
Description	Chrysemys picta cpi-miR-425-5p mature miRNA
Sequence	20 - AAUGACACGAUCACUCCCGCUGAG - 43
Evidence	experimental Illumina [1]

Mature cpi-miR-425-3p

Accession	MIMAT0037876
Description	Chrysemys picta cpi-miR-425-3p mature miRNA
Sequence	57 - CCAUCGGGAAUAUCGUGUCCGU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196