miRBase entry: cpi-mir-429

Stem-loop cpi-mir-429

Accession

MI0029565

Description

Chrysemys picta cpi-mir-429 precursor miRNA

Sequence

ugccugcugauugaugucuuaccagacaaaguuagaucuagcuauuuucgucUAAUACUGUCUGGUAAUGCCGUccaucgcauuggcuaa
.((((((.(((.((((.(((((((((((..(((((((............)))))))..)))))))))).).)))).))))))..)))...

Structure

--u   --   u   u    u -          aa       cuagc 
   gcc  ugc gau gaug c uuaccagaca  guuagau     u
   |||  ||| ||| |||| | ||||||||||  |||||||      
   cgg  acg cua cUGC G AAUGGUCUGU  UAAUcug     a
aau   uu   -   c    C U          CA       cuuuu

Annotation confidence Not enough data

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Genome context

chr24: 8891035-8891124 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-429

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-429-3p

Accession	MIMAT0037877
Description	Chrysemys picta cpi-miR-429-3p mature miRNA
Sequence	53 - UAAUACUGUCUGGUAAUGCCGU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196