miRBase entry: cpi-mir-449a

Stem-loop cpi-mir-449a

Accession

MI0029566

Description

Chrysemys picta cpi-mir-449a precursor miRNA

Sequence

gugugugcuaggaAGGCAGUGUAUUGUUAGCUGGuugaaaaucugacagCAGCUAACCUACAUCUGCUAUCuuauugcacauacua
(((((((((((((.(((((((((..((((((((.(((.........))))))))))).)))).))))).)))))..))))))))..

Structure

--        --     A     -    UU        G   aaa 
  gugugugc  uagga GGCAG UGUA  GUUAGCUG uug   a
  ||||||||  ||||| ||||| ||||  |||||||| |||   u
  cauacacg  auuCU UCGUC ACAU  CAAUCGAC gac   c
au        uu     A     U    -C        -   agu

Annotation confidence Not enough data

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Genome context

KK082967.1: 566511-566596 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-449a-5p

Accession	MIMAT0037878
Description	Chrysemys picta cpi-miR-449a-5p mature miRNA
Sequence	14 - AGGCAGUGUAUUGUUAGCUGG - 34
Evidence	experimental Illumina [1]

Mature cpi-miR-449a-3p

Accession	MIMAT0037879
Description	Chrysemys picta cpi-miR-449a-3p mature miRNA
Sequence	50 - CAGCUAACCUACAUCUGCUAUC - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196