miRBase entry: cpi-mir-449b

Stem-loop cpi-mir-449b

Accession

MI0029567

Description

Chrysemys picta cpi-mir-449b precursor miRNA

Sequence

ugugucugguAGGCAGUGUACUGUUAGCUGGCUgcuuugugugaaucuagcagucucuacuacacugucaccugcugcagg
((((.(.(((.(((((((((..((.((..(((((((..((....))..))))))).)))))))))))))))).).))))..

Structure

--    u u   A         CU  U  CU       uu  g 
  ugug c ggu GGCAGUGUA  GU AG  GGCUgcu  gu u
  |||| | ||| |||||||||  || ||  |||||||  ||  
  acgu g cca cugucacau  ca uc  cugacga  ua g
gg    c u   -         --  -  -u       uc  a

Annotation confidence Not enough data

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Genome context

KK082967.1: 566349-566429 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-449b-5p

Accession	MIMAT0037880
Description	Chrysemys picta cpi-miR-449b-5p mature miRNA
Sequence	11 - AGGCAGUGUACUGUUAGCUGGCU - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196