miRBase entry: cpi-mir-449c

Stem-loop cpi-mir-449c

Accession

MI0029568

Description

Chrysemys picta cpi-mir-449c precursor miRNA

Sequence

gaugugacaguuUGGCAGUGCCUUGCUAGCUGGCUguugagaacuugauauaugaacaguugcuagcugcacuccacauuguugcauuc
(((((((((((.(((.(((((...((((((.(((((((.(............).))))))))))))).)))))))).))))))))))).

Structure

-           u   C     CUU      U       g gaacu 
 gaugugacagu UGG AGUGC   GCUAGC GGCUguu a     u
 ||||||||||| ||| |||||   |||||| ||||||| |      
 uuacguuguua acc ucacg   cgaucg uugacaa u     g
c           c   -     --u      -       g auaua

Annotation confidence Not enough data

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Genome context

KK082967.1: 565372-565460 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-449c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-449c-5p

Accession	MIMAT0037881
Description	Chrysemys picta cpi-miR-449c-5p mature miRNA
Sequence	13 - UGGCAGUGCCUUGCUAGCUGGCU - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196