Stem-loop cpi-mir-449d

Accession

MI0029569

Description

Chrysemys picta cpi-mir-449d precursor miRNA

Sequence

uguguaugugcugauuAGGCAGUGUAUUGUUAGUUAGCuguuguucacauaccagcaacuaaauacgcuuccacauuagcacacgaccuugcau
.((((((((((((((..((.((((((((..(((((.((((.(((....))).))))))))))))))))).))..)))))))))......)))))

Structure

u     ------         uA  C        GU     A    u   u 
 gugua      ugugcugau  GG AGUGUAUU  UAGUU GCug ugu c
 |||||      |||||||||  || ||||||||  ||||| |||| |||  
 uacgu      acacgauua  cc ucgcauaa  aucaa cgac aua a
-     uccagc         ca  u        --     -    c   c 

Annotation confidence Not enough data

Genome context

KK082967.1: 568138-568231 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-449d

Mature cpi-miR-449d-5p

• Accession: MIMAT0037882
• Description: Chrysemys picta cpi-miR-449d-5p mature miRNA
• Sequence: 17 - AGGCAGUGUAUUGUUAGUUAGC - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196