miRBase entry: cpi-mir-451

Stem-loop cpi-mir-451

Accession

MI0029570

Description

Chrysemys picta cpi-mir-451 precursor miRNA

Sequence

agcugagcccauggggcgucaaugAAACCGUUACCAUUACUGACUUUAGUAAUGGUAACGGUUCUacugccgccccagcauccggccagcga
.((((.(((..(((((((.((.((.(((((((((((((((((....))))))))))))))))).)).)).)))))))......)))))))..

Structure

-a    a   ----ca       u  a  A                 A 
  gcug gcc      uggggcg ca ug AACCGUUACCAUUACUG C
  |||| |||      ||||||| || || |||||||||||||||||  
  cgac cgg      accccgc gu aU UUGGCAAUGGUAAUGAU U
ag    -   ccuacg       c  c  C                 U

Annotation confidence Not enough data

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Genome context

KK082936.1: 6573776-6573867 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-451

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-451-5p

Accession	MIMAT0037883
Description	Chrysemys picta cpi-miR-451-5p mature miRNA
Sequence	25 - AAACCGUUACCAUUACUGACUU - 46
Evidence	experimental Illumina [1]

Mature cpi-miR-451-3p

Accession	MIMAT0037884
Description	Chrysemys picta cpi-miR-451-3p mature miRNA
Sequence	46 - UUAGUAAUGGUAACGGUUCU - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196