Stem-loop cpi-mir-1677b

Accession

MI0029595

Description

Chrysemys picta cpi-mir-1677b precursor miRNA

Sequence

agcaacuaagagccuggUCCAGAGCCCAUUGAAGUCAGUgggagauguucuaaUGACUCCAGAGGGCUUUGGAUCaggcccuaaguuaauccac
...((((.((.((((((((((((((((.(((.(((((.(((((....))))).))))).))).)))))))))))))))).)).)))).......

Structure

----agc    a  a                A   A     G     g 
       aacu ag gccuggUCCAGAGCCC UUG AGUCA Uggga a
       |||| || |||||||||||||||| ||| ||||| |||||  
       uuga uc cggaCUAGGUUUCGGG GAC UCAGU aucuu u
caccuaa    a  c                A   C     a     g 

Annotation confidence Not enough data

Genome context

KK088241.1: 10783037-10783130 [+]

Mature cpi-miR-1677b-5p

• Accession: MIMAT0037922
• Description: Chrysemys picta cpi-miR-1677b-5p mature miRNA
• Sequence: 18 - UCCAGAGCCCAUUGAAGUCAGU - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1677b-3p

• Accession: MIMAT0037923
• Description: Chrysemys picta cpi-miR-1677b-3p mature miRNA
• Sequence: 54 - UGACUCCAGAGGGCUUUGGAUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196