miRBase entry: cpi-mir-1720

Stem-loop cpi-mir-1720

Accession

MI0029603

Description

Chrysemys picta cpi-mir-1720 precursor miRNA

Sequence

uucugaucaccucaguuguugcuuuugugaggaucucaagagaAAGCAAUGAGAGGGUGGGUCUGAaaccca
(((.(((((((.(..(((((((((((.((((...))))...)))))))))))..)))).)))).))).....

Structure

-----   u    -   u ag           --g    g 
     uuc gauc acc c  uuguugcuuuu   ugag  
     ||| |||| ||| |  |||||||||||   |||| a
     aAG CUGG UGG G  AGUAACGAAag   acuc  
accca   U    G   - AG           aga    u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK088241.1: 3107406-3107477 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-1720

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-1720-3p

Accession	MIMAT0037934
Description	Chrysemys picta cpi-miR-1720-3p mature miRNA
Sequence	44 - AAGCAAUGAGAGGGUGGGUCUGA - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196