Stem-loop cpi-mir-1805

Accession

MI0029607

Description

Chrysemys picta cpi-mir-1805 precursor miRNA

Sequence

aguggaauauucugggAGUUGUAGUCUUUCAAACAGAgcucugcaaguauauaccUGUAUUGGAACACUACAGCUCcccgaacuuccuaguguc
...((((..(((.((((((((((((.((((((((((..................)))).)))))).)))))))))))).))).)))).......

Structure

----agu    ua   u            C      -    Agcucugc 
       ggaa  uuc gggAGUUGUAGU UUUCAA ACAG        a
       ||||  ||| |||||||||||| |||||| ||||         
       ccuu  aag ccCUCGACAUCA AAGGUU UGUc        a
cugugau    -c   c            C      A    cauauaug 

Annotation confidence Not enough data

Genome context

KK082916.1: 7072762-7072855 [-]

Mature cpi-miR-1805-5p

• Accession: MIMAT0037939
• Description: Chrysemys picta cpi-miR-1805-5p mature miRNA
• Sequence: 17 - AGUUGUAGUCUUUCAAACAGA - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1805-3p

• Accession: MIMAT0037940
• Description: Chrysemys picta cpi-miR-1805-3p mature miRNA
• Sequence: 56 - UGUAUUGGAACACUACAGCUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196