miRBase entry: cpi-mir-2184

Stem-loop cpi-mir-2184

Accession

MI0029608

Description

Chrysemys picta cpi-mir-2184 precursor miRNA

Sequence

gcccuuggguuuccccaAACAGUAAGAGUUUAUGUGCGGugagagcuagaaucuGCAUGUGGACUCCUACUGCUCCgggaggcuggaaguacca
....((.((((((((....(((((.((((((((((((((.............)))))))))))))).)))))....)))))))).)).......

Structure

---gccc  g        caAA     A              ugaga 
       uu gguuuccc    CAGUA GAGUUUAUGUGCGG     g
       || ||||||||    ||||| ||||||||||||||     c
       ag ucggaggg    GUCAU CUCAGGUGUACGuc     u
accauga  g        CCUC     C              uaaga

Annotation confidence Not enough data

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Genome context

KK083788.1: 17035-17128 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-2184

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-2184-5p

Accession	MIMAT0037941
Description	Chrysemys picta cpi-miR-2184-5p mature miRNA
Sequence	18 - AACAGUAAGAGUUUAUGUGCGG - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-2184-3p

Accession	MIMAT0037942
Description	Chrysemys picta cpi-miR-2184-3p mature miRNA
Sequence	55 - GCAUGUGGACUCCUACUGCUCC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196