miRBase entry: cpi-mir-2970

Stem-loop cpi-mir-2970

Accession

MI0029610

Description

Chrysemys picta cpi-mir-2970 precursor miRNA

Sequence

ggucucuuccugucacugcaGACAGUCAGUAGUUGGUCUGgcgagagcaggaauucUCAGAUCACCUCUUGGCUGUGAGugguggugcagagaacac
(.(((((.(...(((((((..((((((((.((.((((((((.(((........))))))))))).)).))))))))..))))))).).))))).)..

Structure

-- g     u cug       aG        U  U        c   agc 
  g ucucu c   ucacugc  ACAGUCAG AG UGGUCUGg gag   a
  | ||||| |   |||||||  |||||||| || |||||||| |||    
  c agaga g   ggugguG  UGUCGGUU UC ACUAGACU cuu   g
ca a     c --u       AG        C  C        -   aag

Annotation confidence Not enough data

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Genome context

KK083069.1: 931102-931198 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-2970

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-2970-5p

Accession	MIMAT0037945
Description	Chrysemys picta cpi-miR-2970-5p mature miRNA
Sequence	21 - GACAGUCAGUAGUUGGUCUG - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-2970-3p

Accession	MIMAT0037946
Description	Chrysemys picta cpi-miR-2970-3p mature miRNA
Sequence	57 - UCAGAUCACCUCUUGGCUGUGAG - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196