Stem-loop cpi-mir-9579

Accession

MI0029615

Description

Chrysemys picta cpi-mir-9579 precursor miRNA

Sequence

ugugguagugauggugAAAGUGCUAGCGUAGAAACGGcagaugcuuuucaugCUCUCUUUGCUAGCGCUUCCAccaagguuaccacu
.((((((((..(((((.(((((((((((.(((...((((((......)).)))).))).))))))))))).)))))..)))))))).

Structure

u        ga     A           U   AAC    -  ug 
 gugguagu  uggug AAGUGCUAGCG AGA   GGca ga  c
 ||||||||  ||||| ||||||||||| |||   |||| ||   
 caccauug  accAC UUCGCGAUCGU UCU   UCgu cu  u
u        ga     C           U   --C    a  uu 

Annotation confidence Not enough data

Genome context

chr22: 1611299-1611385 [+]

Mature cpi-miR-9579-5p

• Accession: MIMAT0037952
• Description: Chrysemys picta cpi-miR-9579-5p mature miRNA
• Sequence: 17 - AAAGUGCUAGCGUAGAAACGG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9579-3p

• Accession: MIMAT0037953
• Description: Chrysemys picta cpi-miR-9579-3p mature miRNA
• Sequence: 53 - CUCUCUUUGCUAGCGCUUCCA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196