Stem-loop cpi-mir-9580

Accession

MI0029617

Description

Chrysemys picta cpi-mir-9580 precursor miRNA

Sequence

ucuguggguaugcauacgcUAUGGGGACAAUACUGGCAUAGcuuuagcacccuagcUAUGCCGGCAUAGCCCCAUGGUguguagacucaccaa
...((((((....(((((((((((((.(.((.(((((((((((..........))))))))))).)).))))))))))))))..))))))...

Structure

ucu      augc             A A  A           uuag 
   gugggu    auacgcUAUGGGG C AU CUGGCAUAGcu    c
   ||||||    ||||||||||||| | || |||||||||||     
   cacuca    ugugUGGUACCCC G UA GGCCGUAUcga    a
aac      --ga             - A  C           uccc 

Annotation confidence Not enough data

Genome context

KK082948.1: 5700020-5700112 [+]

Mature cpi-miR-9580-5p

• Accession: MIMAT0037956
• Description: Chrysemys picta cpi-miR-9580-5p mature miRNA
• Sequence: 20 - UAUGGGGACAAUACUGGCAUAG - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9580-3p

• Accession: MIMAT0037957
• Description: Chrysemys picta cpi-miR-9580-3p mature miRNA
• Sequence: 57 - UAUGCCGGCAUAGCCCCAUGGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196