Stem-loop cpi-mir-9587

Accession

MI0029624

Description

Chrysemys picta cpi-mir-9587 precursor miRNA

Sequence

ugcauccggccaucccucuuCAGCAAAGCACCGAAGCACACGcaucaccuaaagcGCAUGCGUCGGUGCUGCUCAGAagaguggcggacugcu
.(((((((.(((...((((((((((..(((((((.(((..(((..........)))..))).)))))))))))..))))))))))))).))).

Structure

u   -    g   ucc      --    AA       A   CA   auca 
 gca uccg cca   cucuuC  AGCA  GCACCGA GCA  CGc    c
 ||| |||| |||   ||||||  ||||  ||||||| |||  |||     
 cgu aggc ggu   gagaAG  UCGU  CGUGGCU CGU  Gcg    c
u   c    -   ---      AC    --       G   AC   aaau 

Annotation confidence Not enough data

Genome context

KK082950.1: 928166-928258 [+]

Mature cpi-miR-9587-5p

• Accession: MIMAT0037970
• Description: Chrysemys picta cpi-miR-9587-5p mature miRNA
• Sequence: 21 - CAGCAAAGCACCGAAGCACACG - 42
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9587-3p

• Accession: MIMAT0037971
• Description: Chrysemys picta cpi-miR-9587-3p mature miRNA
• Sequence: 56 - GCAUGCGUCGGUGCUGCUCAGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196