Stem-loop cpi-mir-9592

Accession

MI0029629

Description

Chrysemys picta cpi-mir-9592 precursor miRNA

Sequence

aggagucugauccugcuGACCUUAUUCAGACAAAGCUCUuuuugauuccaguaggAUUUUGCCUGAGUAGGGACUGCaggguuuggcccac
.((.(((.((((((((.(.((((((((((.(((((.((((.(((....))).))))))))).)))))))))).).)))))))).)))))..

Structure

-a  a   u        u A          A     C    u   a 
  gg guc gauccugc G CCUUAUUCAG CAAAG UCUu uug u
  || ||| |||||||| | |||||||||| ||||| |||| |||  
  cc cgg uugggaCG C GGGAUGAGUC GUUUU Agga gac u
ca  -   u        U A          C     -    u   c 

Annotation confidence Not enough data

Genome context

KK083105.1: 1284770-1284860 [+]

Mature cpi-miR-9592-5p

• Accession: MIMAT0037980
• Description: Chrysemys picta cpi-miR-9592-5p mature miRNA
• Sequence: 18 - GACCUUAUUCAGACAAAGCUCU - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9592-3p

• Accession: MIMAT0037981
• Description: Chrysemys picta cpi-miR-9592-3p mature miRNA
• Sequence: 56 - AUUUUGCCUGAGUAGGGACUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196