Stem-loop cpi-mir-9594

Accession

MI0029631

Description

Chrysemys picta cpi-mir-9594 precursor miRNA

Sequence

uuaggccauauccucagACAGUGUAAAUCGGCAUAGCGCuuuuaacuucaguggaUCUGUGCUAAUUUACAUCUGCCGaggaccuggcccau
...(((((..(((((.(.((((((((((.(((((((((((.........))))...))))))).))))))).)))).)))))..)))))...

Structure

uua     ua     a A   -       C       ---    uuu 
   ggcca  uccuc g CAG UGUAAAU GGCAUAG   CGCu   a
   |||||  ||||| | ||| ||||||| |||||||   ||||   a
   ccggu  aggaG C GUC ACAUUUA UCGUGUC   guga   c
uac     cc     C -   U       A       Uag    cuu 

Annotation confidence Not enough data

Genome context

KK088244.1: 252269-252360 [-]

Mature cpi-miR-9594-5p

• Accession: MIMAT0037984
• Description: Chrysemys picta cpi-miR-9594-5p mature miRNA
• Sequence: 18 - ACAGUGUAAAUCGGCAUAGCGC - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9594-3p

• Accession: MIMAT0037985
• Description: Chrysemys picta cpi-miR-9594-3p mature miRNA
• Sequence: 56 - UCUGUGCUAAUUUACAUCUGCCG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196