Stem-loop cpi-mir-9595

Accession

MI0029632

Description

Chrysemys picta cpi-mir-9595 precursor miRNA

Sequence

cugcucuccuggcacUCUGCUACACAGCCAGAGCGUCcgugagccacaaguggaUGUCCCGGCUGUGAGUAGCGUgcagggaauggaggaag
((.(..((((.((((.(((((.(((((((.(.(((((((((...)))....)))))).).)))))))))))).)))).))))..).))....

Structure

----  g uc    g    U     A       A A      ----   a 
    cu c  uccu gcac CUGCU CACAGCC G GCGUCc    gug  
    || |  |||| |||| ||||| ||||||| | ||||||    ||| g
    ga g  aggg cgUG GAUGA GUGUCGG C UGUagg    cac  
gaag  g ua    a    C     -       C C      ugaa   c 

Annotation confidence Not enough data

Genome context

KK083050.1: 1405156-1405247 [+]

Mature cpi-miR-9595-5p

• Accession: MIMAT0037986
• Description: Chrysemys picta cpi-miR-9595-5p mature miRNA
• Sequence: 16 - UCUGCUACACAGCCAGAGCGUC - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9595-3p

• Accession: MIMAT0037987
• Description: Chrysemys picta cpi-miR-9595-3p mature miRNA
• Sequence: 55 - UGUCCCGGCUGUGAGUAGCGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196